PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037957-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 91aa    MW: 10021.3 Da    PI: 6.8032
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037957-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.6e-07750344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      rW+    ++++ a + + ++   +W+++a+++  g+++ ++k ++
  PSME_00037957-RA  7 RWSFKQNKQFKVALAVHDKDgpdRWEKVASMVD-GKSAAEVKAHY 50
                      9*****************99*************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.6E-4456IPR001005SANT/Myb domain
SuperFamilySSF466895.06E-10660IPR009057Homeodomain-like
CDDcd001675.72E-6750No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MAGGSTRWSF KQNKQFKVAL AVHDKDGPDR WEKVASMVDG KSAAEVKAHY DILVHDLELI  60
EKGMVPFPNY TEILTQGSSG NNSEKSVKDG V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-25389689RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008782489.13e-26PREDICTED: protein RADIALIS-like 3 isoform X1
SwissprotQ1A1732e-25RADL6_ARATH; Protein RADIALIS-like 6
SwissprotQ58FS31e-25RAD_ANTMA; Transcription factor RADIALIS
TrEMBLD5ADC11e-25D5ADC1_PICSI; Putative uncharacterized protein
STRINGBra015856.1-P5e-25(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-26RAD-like 6